Pubdb

Authors: Zając, Karol; Zhyhulin, Taras; Nowakowski, Piotr; Meizner, Jan; Balis, Bartosz; Czerepak, Konrad; Kasztelnik, Marek; Połeć, Piotr; Oliviero, Sara; Malawski, Maciej

Research groups: Scientific Programmers, Extreme-Scale Data and Computing

Infrastructure and Practices for Sharing and Disseminating In-Silico Medicine Research Data

Printed Conference abstract

Authors: Zhyhulin, Taras; Zając, Karol; Bottin, Francesca; Bubak, Marian; Davico, Giorgio; Kasztelnik, Marek; Malawski, Maciej; Meizner, Jan; Nowakowski, Piotr; Połeć, Piotr; Stanic, Goran

Research groups: Extreme-Scale Data and Computing, Scientific Programmers

Integrating Data Repositories with HPC Resources for Execution of Simulation Models

Printed Conference abstract

Authors: Zhyhulin, Taras; Zając, Karol; Nowakowski, Piotr; Malawski, Maciej; Kasztelnik, Marek; Połeć, Piotr; Bubak, Marian

Research groups: Extreme-Scale Data and Computing

Integrating data repositories with HPC resources for execution of VHT models

Printed Conference abstract

Authors: Zhyhulin, Taras; Zając, Karol; Meizner, Jan; Malawski, Maciej; Nowakowski, Piotr

Research groups: Extreme-Scale Data and Computing

Seamless Integration of Data Sharing Repositories with High-Performance Computing Simulation Platform

Printed Conference abstract

Authors: Zhyhulin, Taras; Zając, Karol; Meizner, Jan; Malawski, Maciej; Kasztelnik, Marek; Bubak, Marian; Nowakowski, Piotr; Połeć, Piotr

Research groups: Extreme-Scale Data and Computing

The use of simulation to support personalised management of deep vein thrombosis and post-thrombotic syndrome.

Submitted Conference abstract

Authors: Otta, Magdalena; Lim, Chung S.; Tsui, J.; Halliday, Ian ; Malawski, Maciej; Narracott, Andrew J.

Research groups: Extreme-Scale Data and Computing

Leveraging ACC Resources for Medical Research

Printed Conference abstract

Authors: Nowakowski, Piotr; Bubak, Marian; Gądek, Krzysztof; Kasztelnik, Marek; Malawski, Maciej; Meizner, Jan; Nowak, Adam; Połeć, Piotr; Zając, Karol; Zhyhulin, Taras

Research groups: Extreme-Scale Data and Computing

Shape vs flow: a 2D statistical shape analysis of the projection of common iliac veins in patients with deep vein thrombosis

Printed Conference manuscript

Authors: Otta, Magdalena; Zając, Karol; Malawski, Maciej; Halliday, Ian ; Lim, Chung S.; Tsui, Janice; Narracott, Andrew J.

Research groups: Extreme-Scale Data and Computing, Scientific Programmers

Heterogeneous computing, storage and network infrastructures for medical applications

Accepted Conference manuscript

Authors: Meizner, Jan; Malawski, Maciej

Research groups: Extreme-Scale Data and Computing

Towards sensitivity analysis: 3D venous modelling in the lower limb

Printed Conference manuscript

Authors: Otta, Magdalena; Zając, Karol; Malawski, Maciej; Halliday, Ian ; Lim, Chung S.; Tsui, Janice; Narracott, Andrew J.

Research groups: Extreme-Scale Data and Computing, Scientific Programmers

Validation of eleven federated learning strategies for multi-contrast image-to-image MRI data synthesis from heterogeneous sources

Printed Journal article

Authors: Fiszer, Jan; Ciupek, Dominika; Malawski, Maciej; Pieciak, Tomasz

Research groups: Extreme-Scale Data and Computing

Applying Cloud-Native Principles to Scientific Computations: An Experiment or a Trend?

Submitted Journal article

Authors: Kosinska, Joanna; Malawski, Maciej; Maliszewski, Krzysztof; Zając, Karol; Oliviero, Sara; La Mattina, Antonino Amedeo

Research groups: Extreme-Scale Data and Computing, Scientific Programmers

Understanding lower limb haemodynamics: sensitivity analysis of a 0D model

Submitted Journal article

Authors: Otta, Magdalena; Saxton, Harry; Halliday, Ian ; Kica, Piotr; Malawski, Maciej; Tsui, Janice; Lim, Chung S.; Narracott, Andrew J.

Research groups: Extreme-Scale Data and Computing

Accelerating Cloud-Based Transcriptomics: Performance Analysis and Optimization of the STAR Aligner Workflow

Printed Conference manuscript

Authors: Kica, Piotr; Lichołai, Sabina; Orzechowski, Michał; Malawski, Maciej

Research groups: Extreme-Scale Data and Computing, Scientific Programmers

Serverless Approach to Running Resource-Intensive STAR Aligner

Printed Conference manuscript

Authors: Kica, Piotr; Orzechowski, Michał; Malawski, Maciej

Research groups: Extreme-Scale Data and Computing, Scientific Programmers

The Next-Gen Federated Search Architecture for Biomedical Knowledge repositories - The LIT-FED-SEARCH Engine

Printed Journal article

Authors: Katulski, Filip; Malawski, Maciej

Research groups: Extreme-Scale Data and Computing

Optimizing STAR Aligner for High Throughput Computing in the Cloud

Printed Conference manuscript

Authors: Kica, Piotr; Lichołai, Sabina; Orzechowski, Michał; Malawski, Maciej

Research groups: Extreme-Scale Data and Computing, Scientific Programmers

Local Sensitivity Analysis of a Closed-Loop in silico Model of the human baroregulation

Printed Conference manuscript

Authors: Tlałka, Karolina; Saxton, Harry; Halliday, Ian ; Xu, Xu; Taylor, Daniel; Narracott, Andrew J.; Malawski, Maciej

Research groups: Extreme-Scale Data and Computing

MICCAI-CDMRI 2023 QuantConn Challenge Findings on Achieving Robust Quantitative Connectivity through Harmonized Preprocessing of Diffusion MRI

Printed Journal article

Authors: Newlin, Nancy R.; Schilling, Kurt; Koudoro, Serge; Chandio, Bramsh Qamar; Kanakaraj, Praitayini; Moyer, Daniel; Kelly, Claire E.; Genc, Sila; Chen, Jian; Yang, Joseph Yuan-Mou; Wu, Ye; He, Yifei; Zhang, Jiawei; Zeng, Qingrun; Zhang, Fan; Adluru, Nagesh; Nath, Vishwesh; Pathak, Sudhir; Schneider, Walter; Gade, Anurag; Rathi, Yogesh; Hendriks, Tom; Vilanova, Anna; Chamberland, Maxime; Pieciak, Tomasz; Ciupek, Dominika; Vega, Antonio Tristan; Aja-Fernandez, Santiago; Malawski, Maciej; ...

Research groups: Extreme-Scale Data and Computing

Sensitivity Analysis of Closed-Loop One-Chamber and Four-Chamber Models with Baroreflex

Printed Journal article

Authors: Tlałka, Karolina; Saxton, Harry; Halliday, Ian ; Xu, Xu; Taylor, Daniel; Narracott, Andrew J.; Malawski, Maciej

Research groups: Extreme-Scale Data and Computing

Novel Approaches Toward Scalable Composable Workflows in Hyper-Heterogeneous Computing Environments

Printed Conference manuscript

Authors: Bader, Jonathan; Belak, Jim; Bement, Matthew; Berry, Matthew; Carson, Robert; Cassol, Daniela; Chan, Stephen; Coleman, John; Day, Kastan; Duque, Alejandro; Fagnan, Kjiersten; Froula, Jeff; Jha, Shantenu; Katz, Daniel S.; Kica, Piotr; Kindratenko, Volodymyr; Kirton, Edward; Kothadia, Ramani; Laney, Daniel; Lehmann, Fabian; Leser, Ulf; Lichołai, Sabina; Malawski, Maciej; Melara, Mario; Player, Elais; Rolchigo, Matt; Sarrafan, Setareh; Sul, Seung-Jin; Syed, Abdullah; Thamsen, Lauritz; Titov, Mikhail; Turilli, Matteo; Caino-Lores, Silvina; Mandal, Anirban

Research groups: Extreme-Scale Data and Computing

Digital twin simulation development and execution on HPC infrastructures

Printed Conference manuscript

Authors: Kasztelnik, Marek; Nowakowski, Piotr; Meizner, Jan; Malawski, Maciej; Nowak, Adam; Gądek, Krzysztof; Zając, Karol; La Mattina, Antonino Amedeo; Bubak, Marian

Research groups: Extreme-Scale Data and Computing

Designing Personalised Gamification of mHealth Survey Applications

Printed Conference manuscript

Authors: Adamczyk, Paulina; Marek, Sylwia; Pręcikowski, Ryszard; Kuś, Maciej; Grzeszczyk, Michal K.; Malawski, Maciej; Lisowska, Aneta

Research groups: Extreme-Scale Data and Computing, Medical Imaging and Robotics

Can gamification reduce the burden of self-reporting in mHealth applications? A feasibility study using machine learning from smartwatch data to estimate cognitive load

Printed Conference manuscript

Authors: Grzeszczyk, Michal K.; Adamczyk, Paulina; Marek, Sylwia; Pręcikowski, Ryszard; Kuś, Maciej; Lelujko, M. Patrycja; Blanco, Rosmary; Trzciński, Tomasz; Sitek, Arkadiusz; Malawski, Maciej; Lisowska, Aneta

Research groups: Medical Imaging and Robotics, Extreme-Scale Data and Computing

Serverless Approach to Sensitivity Analysis of Computational Models

Printed Conference manuscript

Authors: Kica, Piotr; Otta, Magdalena; Czechowicz, Krzysztof; Zając, Karol; Nowakowski, Piotr; Narracott, Andrew J.; Halliday, Ian ; Malawski, Maciej

Research groups: Extreme-Scale Data and Computing, Scientific Programmers

Modelling The Hemodynamics of Coronary Ischemia

Printed Journal article

Authors: Al Baraikan, Abdulaziz; Czechowicz, Krzysztof; Morris, Paul D.; Halliday, Ian ; Gosling, Rebecca C.; Gunn, Julian P.; Narracott, Andrew J.; Williams, Gareth; Garg, Pankaj; Malawski, Maciej; ...

Research groups: other

Using Unused: Non-Invasive Dynamic FaaS Infrastructure with HPC-Whisk

Printed Conference manuscript

Authors: Przybylski, Bartłomiej; Pawlik, Maciej; Żuk, Paweł; Łagosz, Bartłomiej; Malawski, Maciej; Rzadca, Krzysztof

Research groups: Extreme-Scale Data and Computing

Serverless Computing for Scientific Applications

Printed Journal article

Authors: Malawski, Maciej; Balis, Bartosz

Research groups: Extreme-Scale Data and Computing

Subgrouping and personalized risk evaluation for outcome prediction in ANCA associated vasculitis (AAV)

Printed Conference manuscript

Authors: Wójcik, K.; Ćmiel, A.; Satława, T.; Lichołai, Sabina; Wawrzycka-Adamczyk, K.; Biedroń, G.; Masiak, A.; Zdrojewski, Z.; Storoniak, H.; Bułło-Piontecka, B.; Dębska-Ślizień, A.; Jeleniewicz, R.; Majdan, M.; Jakuszko, K.; Augustyniak-Bartosik, H.; Krajewska, M.; Brzosko, I.; Brzosko, M.; Kur-Zalewska, J.; Tłustochowicz, W.; Madej, M.; Hawrot-Kawecka, A.; Kucharz, E.; Głuszko, P.; Wisłowska, M.; Miłkowska-Dymanowska, J.; Lewandowska-Polak, A.; Makowska, J.; Zalewska, J.; Gubala, Tomasz; Malawski, Maciej; Musiał, J.

Research groups: Extreme-Scale Data and Computing, other

Personalized risk evaluation for outcoma prediction in ANCA associated vasculitis (AAV) using latent class analysis and machine learning

Printed Conference manuscript

Authors: Wójcik, K.; Ćmiel, A.; Satława, T.; Lichołai, Sabina; Wawrzycka-Adamczyk, K.; Biedroń, G.; Masiak, A.; Zdrojewski, Z.; Storoniak, H.; Bułło-Piontecka, B.; Dębska-Ślizień, A.; Jeleniewicz, R.; Majdan, M.; Jakuszko, K.; Augustyniak-Bartosik, H.; Krajewska, M.; Brzosko, I.; Brzosko, M.; Kur-Zalewska, J.; Tłustochowicz, W.; Madej, M.; Hawrot-Kawecka, A.; Kucharz, E.; Głuszko, P.; Wisłowska, M.; Miłkowska-Dymanowska, J.; Lewandowska-Polak, A.; Makowska, J.; Zalewska, J.; Gubala, Tomasz; Malawski, Maciej; Musiał, J.

Research groups: Extreme-Scale Data and Computing, other

Federated Learning in the Cloud for Analysis of Medical Images - Experience with Open Source Frameworks

Printed Conference manuscript

Authors: Jabłecki, P.; Ślazyk, F.; Malawski, Maciej

Research groups: Extreme-Scale Data and Computing

Current Trends in Software Engineering Bachelor Theses

Printed Journal article

Authors: Dajda, Jacek; Idzik, Michał; Sroka, Jakub; Sikora, Mikołaj ; Pawłowski, Wiktor ; Smołka, Maciej; Jabłecki, Przemysław; Ślazyk, Filip ; Malawski, Maciej; Majerz, Emilia ; Pasternak, Aleksandra ; Dzwinel, Witold; Kania, Wojciech ; Hnatkowska, Bogumiła ; Thomas, Wojciech ; Świebocka-Więk, Joanna ; Paszkiewicz, Andrzej

Research groups: Extreme-Scale Data and Computing

Preface to the Special Issue on Software Engineering

Printed Journal article

Authors: Bubak, Marian; Malawski, Maciej; Słota, Renata G.

Research groups: Scientific Programmers

The EurValve model execution environment

Printed Journal article

Authors: Bubak, Marian; Czechowicz, K.; Gubala, Tomasz; Hose, D. R.; Kasztelnik, Marek; Malawski, Maciej; Meizner, Jan; Nowakowski, Piotr; Wood, S.

Research groups: Extreme-Scale Data and Computing, Scientific Programmers

Toward the Observability of Cloud-Native Applications: The Overview of the State-of-the-Art

Printed Journal article

Authors: Kosinska, Joanna; Balis, Bartosz; Konieczny, Marek; Malawski, Maciej; Zielinski, Slawomir

Research groups: Extreme-Scale Data and Computing

GraphTar: applying word2vec and graph neural networks to miRNA target prediction

Printed Journal article

Authors: Przybyszewski, Jan; Malawski, Maciej; Lichołai, Sabina

Research groups: Extreme-Scale Data and Computing

Data reconstruction from machine learning models via inverse estimation and Bayesian inference

Printed Conference manuscript

Authors: Hartoyo, Agus; Ciupek, Dominika; Malawski, Maciej; Crimi, Alessandro

Research groups: Computational Neuroscience, Extreme-Scale Data and Computing

Malawski, Maciej

Publications