Pubdb

Authors: Taras Zhyhulin, Karol Zając, Francesca Bottin, Marian Bubak, Giorgio Davico, Marek Kasztelnik, Maciej Malawski, Jan Meizner, Piotr Nowakowski, Piotr Połeć, Goran Stanic

Research groups: Extreme-Scale Data and Computing, Scientific Programmers

Research Data Sharing Incentivisation Toolkit

Printed Conference abstract

Authors: Taras Zhyhulin, Marek Kasztelnik, Maciej Malawski, Jan Meizner, Piotr Nowakowski, Piotr Połeć, Karol Zając

Research groups: Scientific Programmers

Serverless Approach to Running Resource-Intensive STAR Aligner

Printed Conference manuscript

Authors: Piotr Kica, Michał Orzechowski, Maciej Malawski

Research groups: Extreme-Scale Data and Computing, Scientific Programmers

Shape vs flow: a 2D statistical shape analysis of the projection of common iliac veins in patients with deep vein thrombosis

Printed Conference manuscript

Authors: Magdalena Otta, Karol Zając, Maciej Malawski, Ian Halliday, Chung Lim, Janice Tsui, Andrew J. Narracott

Research groups: Extreme-Scale Data and Computing, Scientific Programmers

Solutions for Distributed Memory Access Mechanism on HPC Clusters

Printed Conference manuscript

Authors: Jan Meizner, Maciej Malawski

Research groups: Extreme-Scale Data and Computing

The Use Of Simulation To Support Personalised Management Of Deep Vein Thrombosis And Post-thrombotic Syndrome.

Accepted Conference abstract

Authors: Magdalena Otta, C.S. Lim, J. Tsui, Ian Halliday, Maciej Malawski, Andrew J. Narracott

Research groups: Extreme-Scale Data and Computing

Toolkit for Managing Research Data in Medical Simulations on HPC Infrastructure

Printed Conference abstract

Authors: Taras Zhyhulin, Karol Zając, Piotr Nowakowski, Maciej Malawski, Jan Meizner, Marek Kasztelnik, Piotr Połeć

Research groups: Scientific Programmers

Towards LLM-assisted Execution Planning and Optimizing of Bioinformatics Batch Processing

Accepted Conference manuscript

Authors: Piotr Kica, Michał Orzechowski, Maciej Malawski

Research groups: Extreme-Scale Data and Computing

Towards sensitivity analysis: 3D venous modelling in the lower limb

Printed Conference manuscript

Authors: Magdalena Otta, Karol Zając, Maciej Malawski, Ian Halliday, Chung Lim, Janice Tsui, Andrew J. Narracott

Research groups: Extreme-Scale Data and Computing, Scientific Programmers

Validation of Various Normalization Methods for Brain Tumor Segmentation: Can Federated Learning Overcome This Heterogeneity?

Printed Conference manuscript

Authors: Jan Fiszer, Dominika Ciupek, Maciej Malawski

Research groups: Extreme-Scale Data and Computing

Enhancing large-scale cohort simulations through integrated HPC infrastructure and model execution environment

Printed Conference abstract

Authors: Karol Zając, Taras Zhyhulin, Piotr Nowakowski, Jan Meizner, Bartosz Balis, Konrad Czerepak, Marek Kasztelnik, Piotr Połeć, Sara Oliviero, Maciej Malawski

Research groups: Scientific Programmers, Extreme-Scale Data and Computing

Integrating Data Repositories with HPC Resources for Execution of Simulation Models

Printed Conference abstract

Authors: Taras Zhyhulin, Karol Zając, Piotr Nowakowski, Maciej Malawski, Marek Kasztelnik, Piotr Połeć, Marian Bubak

Research groups: Extreme-Scale Data and Computing

Integrating data repositories with HPC resources for execution of VHT models

Printed Conference abstract

Authors: Taras Zhyhulin, Karol Zając, Jan Meizner, Maciej Malawski, Piotr Nowakowski

Research groups: Extreme-Scale Data and Computing

Local Sensitivity Analysis of a Closed-Loop in silico Model of the human baroregulation

Printed Conference manuscript

Authors: Karolina Tlałka, Harry Saxton, Ian Halliday, Xu Xu, Daniel Taylor, Andrew J. Narracott, Maciej Malawski

Research groups: Extreme-Scale Data and Computing

MICCAI-CDMRI 2023 QuantConn Challenge Findings on Achieving Robust Quantitative Connectivity through Harmonized Preprocessing of Diffusion MRI

Printed Journal article

Authors: Nancy R. Newlin, Kurt Schilling, Serge Koudoro, Bramsh Qamar Chandio, Praitayini Kanakaraj, Daniel Moyer, Claire E. Kelly, Sila Genc, Jian Chen, Joseph Yuan-Mou Yang, Ye Wu, Yifei He, Jiawei Zhang, Qingrun Zeng, Fan Zhang, Nagesh Adluru, Vishwesh Nath, Sudhir Pathak, Walter Schneider, Anurag Gade, Yogesh Rathi, Tom Hendriks, Anna Vilanova, Maxime Chamberland, Tomasz Pieciak, Dominika Ciupek, Antonio Tristan Vega, Santiago Aja-Fernandez, Maciej Malawski, ...

Research groups: Extreme-Scale Data and Computing

Optimizing STAR Aligner for High Throughput Computing in the Cloud

Printed Conference manuscript

Authors: Piotr Kica, Sabina Lichołai, Michał Orzechowski, Maciej Malawski

Research groups: Extreme-Scale Data and Computing, Scientific Programmers

Seamless Integration of Data Sharing Repositories with High-Performance Computing Simulation Platform

Printed Conference abstract

Authors: Taras Zhyhulin, Karol Zając, Jan Meizner, Maciej Malawski, Marek Kasztelnik, Marian Bubak, Piotr Nowakowski, Piotr Połeć

Research groups: Extreme-Scale Data and Computing

Sensitivity Analysis of Closed-Loop One-Chamber and Four-Chamber Models with Baroreflex

Printed Journal article

Authors: Karolina Tlałka, Harry Saxton, Ian Halliday, Xu Xu, Daniel Taylor, Andrew J. Narracott, Maciej Malawski

Research groups: Extreme-Scale Data and Computing

The Next-Gen Federated Search Architecture for Biomedical Knowledge repositories - The LIT-FED-SEARCH Engine

Printed Journal article

Authors: Filip Katulski, Maciej Malawski

Research groups: Extreme-Scale Data and Computing

Can gamification reduce the burden of self-reporting in mHealth applications? A feasibility study using machine learning from smartwatch data to estimate cognitive load

Printed Conference manuscript

Authors: Michal K. Grzeszczyk, Paulina Adamczyk, Sylwia Marek, Ryszard Pręcikowski, Maciej Kuś, M. Patrycja Lelujko, Rosmary Blanco, Tomasz Trzciński, Arkadiusz Sitek, Maciej Malawski, Aneta Lisowska

Research groups: Medical Imaging and Robotics, Extreme-Scale Data and Computing

Designing Personalised Gamification of mHealth Survey Applications

Printed Conference manuscript

Authors: Paulina Adamczyk, Sylwia Marek, Ryszard Pręcikowski, Maciej Kuś, Michal K. Grzeszczyk, Maciej Malawski, Aneta Lisowska

Research groups: Extreme-Scale Data and Computing, Medical Imaging and Robotics

Digital twin simulation development and execution on HPC infrastructures

Printed Conference manuscript

Authors: Marek Kasztelnik, Piotr Nowakowski, Jan Meizner, Maciej Malawski, Adam Nowak, Krzysztof Gądek, Karol Zając, Antonino Amedeo La Mattina, Marian Bubak

Research groups: Extreme-Scale Data and Computing

GraphTar: applying word2vec and graph neural networks to miRNA target prediction

Printed Journal article

Authors: Jan Przybyszewski, Maciej Malawski, Sabina Lichołai

Research groups: Extreme-Scale Data and Computing

Leveraging ACC Resources for Medical Research

Printed Conference abstract

Authors: Piotr Nowakowski, Marian Bubak, Krzysztof Gądek, Marek Kasztelnik, Maciej Malawski, Jan Meizner, Adam Nowak, Piotr Połeć, Karol Zając, Taras Zhyhulin

Research groups: Extreme-Scale Data and Computing

Modelling The Hemodynamics of Coronary Ischemia

Printed Journal article

Authors: Abdulaziz Al Baraikan, Krzysztof Czechowicz, Paul D. Morris, Ian Halliday, Rebecca C. Gosling, Julian P. Gunn, Andrew J. Narracott, Gareth Williams, Pankaj Garg, Maciej Malawski, ...

Research groups: other

Novel Approaches Toward Scalable Composable Workflows in Hyper-Heterogeneous Computing Environments

Printed Conference manuscript

Authors: Jonathan Bader, Jim Belak, Matthew Bement, Matthew Berry, Robert Carson, Daniela Cassol, Stephen Chan, John Coleman, Kastan Day, Alejandro Duque, Kjiersten Fagnan, Jeff Froula, Shantenu Jha, Daniel S. Katz, Piotr Kica, Volodymyr Kindratenko, Edward Kirton, Ramani Kothadia, Daniel Laney, Fabian Lehmann, Ulf Leser, Sabina Lichołai, Maciej Malawski, Mario Melara, Elais Player, Matt Rolchigo, Setareh Sarrafan, Seung-Jin Sul, Abdullah Syed, Lauritz Thamsen, Mikhail Titov, Matteo Turilli, Silvina Caino-Lores, Anirban Mandal

Research groups: Extreme-Scale Data and Computing

Serverless Approach to Sensitivity Analysis of Computational Models

Printed Conference manuscript

Authors: Piotr Kica, Magdalena Otta, Krzysztof Czechowicz, Karol Zając, Piotr Nowakowski, Andrew J. Narracott, Ian Halliday, Maciej Malawski

Research groups: Extreme-Scale Data and Computing, Scientific Programmers

Toward the Observability of Cloud-Native Applications: The Overview of the State-of-the-Art

Printed Journal article

Authors: Joanna Kosinska, Bartosz Balis, Marek Konieczny, Maciej Malawski, Slawomir Zielinski

Research groups: Extreme-Scale Data and Computing

Personalized risk evaluation for outcoma prediction in ANCA associated vasculitis (AAV) using latent class analysis and machine learning

Printed Conference manuscript

Authors: K. Wójcik, A. Ćmiel, T. Satława, Sabina Lichołai, K. Wawrzycka-Adamczyk, G. Biedroń, A. Masiak, Z. Zdrojewski, H. Storoniak, B. Bułło-Piontecka, A. Dębska-Ślizień, R. Jeleniewicz, M. Majdan, K. Jakuszko, H. Augustyniak-Bartosik, M. Krajewska, I. Brzosko, M. Brzosko, J. Kur-Zalewska, W. Tłustochowicz, M. Madej, A. Hawrot-Kawecka, E. Kucharz, P. Głuszko, M. Wisłowska, J. Miłkowska-Dymanowska, A. Lewandowska-Polak, J. Makowska, J. Zalewska, Tomasz Gubala, Maciej Malawski, J. Musiał

Research groups: Extreme-Scale Data and Computing, other

Serverless Computing for Scientific Applications

Printed Journal article

Authors: Maciej Malawski, Bartosz Balis

Research groups: Extreme-Scale Data and Computing

Subgrouping and personalized risk evaluation for outcome prediction in ANCA associated vasculitis (AAV)

Printed Conference manuscript

Authors: K. Wójcik, A. Ćmiel, T. Satława, Sabina Lichołai, K. Wawrzycka-Adamczyk, G. Biedroń, A. Masiak, Z. Zdrojewski, H. Storoniak, B. Bułło-Piontecka, A. Dębska-Ślizień, R. Jeleniewicz, M. Majdan, K. Jakuszko, H. Augustyniak-Bartosik, M. Krajewska, I. Brzosko, M. Brzosko, J. Kur-Zalewska, W. Tłustochowicz, M. Madej, A. Hawrot-Kawecka, E. Kucharz, P. Głuszko, M. Wisłowska, J. Miłkowska-Dymanowska, A. Lewandowska-Polak, J. Makowska, J. Zalewska, Tomasz Gubala, Maciej Malawski, J. Musiał

Research groups: Extreme-Scale Data and Computing, other

Using Unused: Non-Invasive Dynamic FaaS Infrastructure with HPC-Whisk

Printed Conference manuscript

Authors: Bartłomiej Przybylski, Maciej Pawlik, Paweł Żuk, Bartłomiej Łagosz, Maciej Malawski, Krzysztof Rzadca

Research groups: Extreme-Scale Data and Computing

Current Trends in Software Engineering Bachelor Theses

Printed Journal article

Authors: Jacek Dajda, Michał Idzik, Jakub Sroka, Mikołaj Sikora, Wiktor Pawłowski, Maciej Smołka, Przemysław Jabłecki, Filip Ślazyk, Maciej Malawski, Emilia Majerz, Aleksandra Pasternak, Witold Dzwinel, Wojciech Kania, Bogumiła Hnatkowska, Wojciech Thomas, Joanna Świebocka-Więk, Andrzej Paszkiewicz

Research groups: Extreme-Scale Data and Computing

Federated Learning in the Cloud for Analysis of Medical Images - Experience with Open Source Frameworks

Printed Conference manuscript

Authors: P. Jabłecki, F. Ślazyk, Maciej Malawski

Research groups: Extreme-Scale Data and Computing

Preface to the Special Issue on Software Engineering

Printed Journal article

Authors: Marian Bubak, Maciej Malawski, Renata G. Słota

Research groups: Scientific Programmers

The EurValve model execution environment

Printed Journal article

Authors: Marian Bubak, K. Czechowicz, Tomasz Gubala, D. R. Hose, Marek Kasztelnik, Maciej Malawski, Jan Meizner, Piotr Nowakowski, S. Wood

Research groups: Extreme-Scale Data and Computing, Scientific Programmers

Maciej Malawski

Publications