Publications

Displaying items 121-135 of 236 in total
SARS-CoV-2 infectivity can be modulated through bacterial grooming of the glycocalyx
Printed Journal article

Authors: Martino, Cameron; Kellman, Benjamin P.; Sandoval, Daniel R.; Clausen, Thomas Mandel; Cooper, Robert; Benjdia, Alhosna; Soualmia, Feryel; Clark, Alex E.; Garretson, Aaron F.; Marotz, Clarisse A.; Song, Se Jin; Wandro, Stephen; Zaramela, Livia S.; Salido, Rodolfo A.; QiyunZhu, Erick Armingol; Vázquez-Baeza, Yoshiki; McDonald, Daniel; Sorrentino, James T.; Taylor, Bryn; Belda-Ferre, Pedro; Das, Promi; Ali, Farhana; Liang, Chenguang; Zhang, Yujie; Schifanella, Luca; Covizzi, Alice; Lai, Alessia; Riva, Agostino; Basting, Christopher; AnnBroedlow, Courtney; Havulinna, Aki S.; Jousilahti, Pekka; Estaki, Mehrbod; Kościółek, Tomasz; Kuplicki, Rayus; Victor, Teresa A.; Paulus, Martin P.; Savage, Kristen E.; Benbow, Jennifer L.; Spielfogel, Emma S.; Anderson, Cheryl A. M.; Martinez, Maria Elena; Lacey, James V.; Jr, Shi Huang; NiinaHaiminen, Laxmi Parida; Kim, Ho-Cheol; Gilbert, Jack A.; Sweeney, Daniel A.; Allard, Sarah M.; Swafford, Austin D.; Cheng, Susan; MichaelInoyue, Teemu Niiranen; Jain, Mohit; Salomaa, Veikko; Zengler, Karsten; Klatt, Nichole R.; Hasty, Jeff; Berteau, Olivier; Carlin, Aaron F.; Esko, Jeffrey D.; Lewis, Nathan E.; Knight, Rob

Research groups: Structural and Functional Genomics Group

Effects of data transformation and model selection on feature importance in microbiome classification data
Printed Journal article

Authors: Karwowska, Zuzanna; Aasmets, Oliver; Estonian Biobank research team; Kościółek, Tomasz; Org, Elin

Research groups: Structural and Functional Genomics Group

Multi-Center Fetal Brain Tissue Annotation (FeTA) Challenge 2022 Results
Printed Journal article

Authors: Payette, Kelly; Steger, Céline; Licandro, Roxane; de Dumast, Priscille; Li, Hongwei Bran; Barkovich, Matthew; Li, Liu; Dannecker, Maik; Chen, Chen; Ouyang, Cheng; McConnell, Niccolò; Miron, Alina; Li, Yongmin; Uus, Alena; Grigorescu, Irina; Gilliland, Paula Ramirez; Siddiquee, Md Mahfuzur Rahman; Xu, Daguang; Myronenko, Andriy; Wang, Haoyu; Huang, Ziyan; Ye, Jin; Alenyà, Mireia; Comte, Valentin; Camara, Oscar; Masson, Jean-Baptiste; Nilsson, Astrid; Godard, Charlotte; Mazher, Moona; Qayyum, Abdul; Gao, Yibo; Zhou, Hangqi; Gao, Shangqi; Fu, Jia; Dong, Guiming; Wang, Guotai; Rieu, ZunHyan; Yang, HyeonSik; Lee, Minwoo; Płotka, Szymon; Grzeszczyk, Michal K.; Sitek, Arkadiusz; Daza, Luisa Vargas; Usma, Santiago; Arbelaez, Pablo; Lu, Wenying; Zhang, Wenhao; Liang, Jing; Valabregue, Romain; Joshi, Anand A.; Nayak, Krishna N.; Leahy, Richard M.; Wilhelmi, Luca; Dändliker, Aline; Ji, Hui; Gennari, Antonio G.; Jakovčić, Anton; Klaić, Melita; Adžić, Ana; Marković, Pavel; Grabarić, Gracia; Kasprian, Gregor; Dovjak, Gregor; Rados, Milan; Vasung, Lana; Cuadra, Meritxell Bach; Jakab, Andras

Research groups: Medical Imaging and Robotics

Transcriptomic profiling of “brain-eating amoeba” Naegleria fowleri infection in mice: the host and the protozoa perspectives
Printed Journal article

Authors: Guerlais, V.; Allouch, N.; Moseman, E. A.; Wojciechowska, Alicja W.; Wojciechowski, Jakub W.; Marcelino, I

Research groups: Structural and Functional Genomics Group

Refining antimicrobial photodynamic therapy: effect of charge distribution and central metal ion in fluorinated porphyrins on effective control of planktonic and biofilm bacterial forms
Printed Journal article

Authors: Pucelik, Barbara; Barzowska, Agata; Sułek, Adam; Werłos, Mateusz; Dąbrowski, Janusz M.

Research groups: Structural and Functional Genomics Group

Placental Vessel Segmentation and Registration in Fetoscopy: Literature Review and MICCAI FetReg2021 Challenge Findings (old title: A Challenge on Placental Vessel Segmentation and Registration in Fetoscopy)
Printed Journal article

Authors: Płotka, Szymon; Lisowska, Aneta; Sitek, Arkadiusz; ...

Research groups: Medical Imaging and Robotics

High performance computing requirements for the calculation of a morphology model of the human whole brain at the nanoscale
Printed Conference manuscript

Authors: Nowiński, Wieslaw L.

Research groups: Senior Researchers

Impact of the pre-processing and balancing of EEG data on the performance of graph neural network for epileptic seizure classification
Printed Conference manuscript

Authors: Mazurek, Szymon; Blanco, Rosmary; Argasiński, Jan K.; Roget, Joan Falco; Crimi, Alessandro

Research groups: Computational Neuroscience

Novel Approaches Toward Scalable Composable Workflows in Hyper-Heterogeneous Computing Environments
Printed Conference manuscript

Authors: Bader, Jonathan; Belak, Jim; Bement, Matthew; Berry, Matthew; Carson, Robert; Cassol, Daniela; Chan, Stephen; Coleman, John; Day, Kastan; Duque, Alejandro; Fagnan, Kjiersten; Froula, Jeff; Jha, Shantenu; Katz, Daniel S.; Kica, Piotr; Kindratenko, Volodymyr; Kirton, Edward; Kothadia, Ramani; Laney, Daniel; Lehmann, Fabian; Leser, Ulf; Lichołai, Sabina; Malawski, Maciej; Melara, Mario; Player, Elais; Rolchigo, Matt; Sarrafan, Setareh; Sul, Seung-Jin; Syed, Abdullah; Thamsen, Lauritz; Titov, Mikhail; Turilli, Matteo; Caino-Lores, Silvina; Mandal, Anirban

Research groups: Extreme-Scale Data and Computing

Performing Tasks in Virtual Reality. Interplay between Realism and Visual Imagery
Printed Conference manuscript

Authors: Lipp, Natalia; Strojny, Paweł; Strojny, Agnieszka; Śpiewak, Sławomir; Argasiński, Jan K.; Korzeniowski, Przemysław

Research groups: Medical Imaging and Robotics, Computational Neuroscience

Are You Aroused Enough to See the Difference? The Role of Physiological Arousal in Perceiving Realism of Virtual Scene
Printed Conference manuscript

Authors: Lipp, Natalia; Strojny, Paweł; Strojny, Agnieszka; Śpiewak, Sławomir; Argasiński, Jan K.; Korzeniowski, Przemysław

Research groups: Medical Imaging and Robotics, Computational Neuroscience

Electroencephalographic (EEG) correlates of Visually Induced Motion Sickness (VIMS) in the Virtual Reality (VR) based simulations
Printed Conference manuscript

Authors: Argasiński, Jan K.; Lipp, Natalia; Mazurek, Szymon

Research groups: Computational Neuroscience, Medical Imaging and Robotics

Digital twin simulation development and execution on HPC infrastructures
Printed Conference manuscript

Authors: Kasztelnik, Marek; Nowakowski, Piotr; Meizner, Jan; Malawski, Maciej; Nowak, Adam; Gądek, Krzysztof; Zając, Karol; La Mattina, Antonino Amedeo; Bubak, Marian

Research groups: Extreme-Scale Data and Computing

Designing Personalised Gamification of mHealth Survey Applications
Printed Conference manuscript

Authors: Adamczyk, Paulina; Marek, Sylwia; Pręcikowski, Ryszard; Kuś, Maciej; Grzeszczyk, Michal K.; Malawski, Maciej; Lisowska, Aneta

Research groups: Extreme-Scale Data and Computing, Medical Imaging and Robotics

Longitudinal Functional Connectome In Pediatric Concussion: An A-CAP Study
Printed Journal article

Authors: Onicas, Adrian; ...

Research groups: Computational Neuroscience